Jmol Molecular Visualization 1.1
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ABOUT Jmol Molecular Visualization
Jmol is a highly respected open-source molecular visualization project (http://jmol.sourceforge.net) traditionally involving a stand-alone Java application or an embedded applet on a web page. Jmol is now available on Android tablets.
Users of the Jmol Molecular Visualization Activity can download and investigate on their Android tablet over 60,000 biomolecular structures directly from the Protein Data Bank (PDB) by keyword or PDB ID and over 40,000,000 unique structures from the National Institutes of Health National Cancer Institute (NIH/NCI) using a wide variety of chemical identifiers, including CAS registry numbers, InChI keys, trade names, common names, and IUPAC-format names, among others. (For a full list, see http://cactus.nci.nih.gov/chemical/structure.) Files from any other internet-available site that can be read by Jmol may also be loaded.
The Jmol Molecular Visualization Activity is a nearly full touch-screen implementation of Jmol allowing for command-line entry of Jmol commands (see http://chemapps.stolaf.edu/jmol/docs) as well as a variety of preset simple visualization modes. Additional renderings include a full range of visualizations for crystals (unit cells, symmetry operators, Miller planes, for example), a wide variety of surfaces including Van der Waals surfaces, solvent-accessible surfaces, cavities, and molecular surfaces, and atomic and molecular orbitals.
Special features of the Android version of Jmol include a connection to the gyroscope, allowing for initiating of spinning by simply moving the tablet in a natural fashion (see http://www.youtube.com/watch?v=JPwvCmD5IDg and http://www.youtube.com/watch?v=D7uOkhoJ0Oc).
This activity is under active development. Feedback is much appreciated.